# Configuration data for the genomap.pl program. Variab le is first # entry, followed by a space or tab and then a single entry (no spaces) # for the value of the variable. If no entry is provide "d," the variable is not set. # Comments must be designated by '#' on separate lines, and are ignored by program ### REQUIRED ### # set mother, father, and blank names" # All names must be same throughout (case insensitive) mother 52-225 father D124 # name of negative control. Excluded from output. blank BLANK # optional identifiers for grandparents # name of mother of mother (maternal grandmother) m_gmthr GM # name of father of mother (maternal grandfather) m_gfthr XP # name of mother of mother (paternal grandmother) p_gmthr YM # name of father of father (paternal grandfather) p_gfthr YP # Optional: Parental species. For pure species, use a single etter (A-Z). For # hybrids, use two letters to indicate the parental species # Used for determining species origins of alleles in interspecific # crosses) #sp_mthr TD #sp_fthr D #sp_m_gmthr T #sp_m_gfthr D #sp_p_gmthr D #sp_p_gfthr D # Individuals, loci, and/or alleles to exclude" # If all loci for one individual, type ALL ALL # If all individuals for one locus, type ALL ALL # e.g., to exclude all data for locus homo: # exclude ALL 127-A ALL # to exclude all data for individual 585: # to exclude only locus homo for individual 585: #exclude 585 127-A ALL # to exclude only allele MF-150 for locus homo # exclude ALL 127-A MF-150 # note: allele exclusion only works for mapmaker output # note: don't exclude a single allele for a single individual!