Partial Microarrays -- Shewanella
Dorothea Thompson

Listed below are the 691 different open reading frames used to construct partial genome microarrays for the metal-reducing bacterium Shewanella oneidensis MR-1. Partial genome arrays were used to analyze mutations in the putative regulatory genes fur (ferric uptake regulator) and etrA (electron transport regulator A) and to investigate differential gene expression patterns under different growth conditions. Predicted gene functions are based on the late 1999 sequence annotation by The Institute for Genomic Research (TIGR). Sequence determination of the S. oneidensis MR-1 genome was completed in 2001 by TIGR under the support of the U. S. Department of Energy (DOE).

• DNA topoisomerase i {Escherichia coli}
• thioredoxin, putative {Haemophilus influenzae}
• 16 kDa heat shock protein A {Escherichia coli} EGAD:20071 0.0%
• 2-oxoglutarate dehydrogenase e1 component {Escherichia coli}
• 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase {Escherichia coli}
• 35.6 kd protein in tpx-fnr intergenic region
• 3-demethylubiquinone-9 3-methyltransferase {Escherichia coli}
• 3-oxoacid CoA transferase (OXCT) {Homo sapiens} EGAD:45473 0.0%
• 4-hydroxy-2-oxoglutarate aldolase {Escherichia coli}
• 4-hydroxybenzoate octaprenyltransferase (ec 2.5.1.-) (4-hb polyprenyltransferase)
• 6-phosphogluconate dehydrogenase, decarboxylating ii (ec 1.1.1.44) (gntzii)
• 6-phosphogluconolactonase {Pseudomonas aeruginosa}
• acetate kinase {Escherichia coli} other roles: 114
• acetoacetate metabolism regulatory protein AtoC {Escherichia coli}
• acetoacetate metabolism regulatory protein AtoC {Escherichia coli}
• acetoacetyl-CoA reductase {Zoogloea ramigera}
• acetolactate synthase (ilvB) {Lactococcus lactis}
• acetyl-CoA synthetase {Lysobacter}
• acetyl-coenzyme A synthetase {Escherichia coli}
• acetyltransferase {Synechocystis PCC6803}
• aconitate hydratase 1 {Escherichia coli}
• aconitate hydratase 2 {Escherichia coli}
• acriflavin resistance protein A precursor, putative {Escherichia coli}
• acriflavine resistance protein-related {Haemophilus influenzae}
• acriflavine resistance protein-related {Haemophilus influenzae}
• adenylate cyclase {Aeromonas hydrophila}
• adenylate cyclase {Spirulina platensis}
• adenylate cyclase 2, putative {Rhizobium meliloti}
• adenylate cyclase, putative {Aeromonas hydrophila}
• adenylylsulfate kinase (ec 2.7.1.25) (aps kinase) (atp adenosine-5'- phosphosulfate 3'-phosphotransferase)
• ADP-glucose synthetase {Agrobacterium radiobacter} EGAD:20589 0.0%
• aerobic formate-dehydrogenase
• aerobic respiration control protein ArcA {Escherichia coli}
• aerotaxis receptor Aer {Pseudomonas putida}
• AhpC {Pseudomonas putida}
• alcaligin biosynthesis enzyme (AlcA) {Bordetella bronchiseptica}
• AlcB protein {Bordetella bronchiseptica}
• AlcC protein {Bordetella bronchiseptica}
• alcohol dehydrogenase
• alcohol dehydrogenase {Rhodospirillum rubrum}
• alcohol dehydrogenase, iron-containing {Archaeoglobus fulgidus}
• aldehyde dehydrogenase {Aquifex aeolicus}
• aldehyde dehydrogenase {Azotobacter vinelandii}
• aldose 1-epimerase {Escherichia coli} EGAD:30590 0.0%
• alginate lyase {Pseudomonas sp. W7}
• alkaline phosphatase {Enterococcus faecalis}
• alkaline phosphatase {Synechococcus sp.}
• alkaline phosphatase-related {Canis familiaris}
• alkaline phosphatase-related {Canis familiaris}
• alkyl hydroperoxide reductase subunit f (ec 1.6.4.-)
• alpha-glucosidase {Bacillus sp.} EGAD:12575 0.0%
• anaerobic dimethyl sulfoxide reductase chain A precursor {Escherichia coli}
• anaerobic dimethyl sulfoxide reductase chain A precursor {Escherichia coli}
• anaerobic ribonucleoside-triphosphate reductase
• anaerobic ribonucleoside-triphosphate reductase activating protein
• aquaporin Z {Escherichia coli}
• ArsC {Pseudomonas aeruginosa}
• ATP synthase F0, subunit A {Haemophilus influenzae} EGAD:29111 0.0%
• ATPase FbpC {Pasteurella haemolytica}
• autoinducer-2 production protein LuxS {Vibrio harveyi}
• azurin {Pseudomonas fluorescens} EGAD:5004 0.0%
• bacterioferritin {Azotobacter vinelandii} all roles: 96 145
• bacterioferritin {Synechocystis PCC6803}
• bacterioferritin comigratory protein {Haemophilus influenzae}
• bira bifunctional protein-related {Escherichia coli} all roles: 77
• C4-dicarboxylate membrane transporter {Wolinella succinogenes}
• c4-dicarboxylate transport sensor protein DctB, putative {Rhizobium leguminosarum}
• c4-dicarboxylate transport transcriptional regulatory protein DcdT {Rhizobium leguminosarum}
• C4-dicarboxylate transporter, putative, putative {Methanococcus jannaschii}
• c4-dicarboxylate-binding periplasmic protein precursor {Rhodobacter capsulatus}
• capsule synthesis protein OtnA {Vibrio cholerae}
• carbomycin resistance protein-related {Streptomyces thermotolerans}
• catalase {Onchocerca volvulus}
• catalase hpi {Synechocystis PCC6803}
• catalase/peroxidase {Yersinia pestis}
• cation efflux system protein CzcA, putative {Synechocystis PCC6803}
• cation efflux system, putative {Aquifex aeolicus}
• cbb3-type cytochrome c oxidase CcoP subunit {Rhodobacter sphaeroides}
• cb-type cytochrome c oxidase CcoN subunit {Magnetospirillum magnetotacticum}
• Ccm2 protein {Proteus mirabilis}
• ccmA, CytC maturation, MR-1
• cell cycle protein MesJ {Escherichia coli}
• cell wall polysaccharide synthesis protein OtnE {Vibrio cholerae}
• cell wall polysaccharide synthesis protein OtnF, putative {Vibrio cholerae}
• cell-cell signaling protein, C-factor {Synechocystis PCC6803}
• CheA {Pseudomonas putida} GP:2853600
• CheB {Pseudomonas putida} GP:2853601
• chemotaxis CheV homolog {Vibrio parahaemolyticus}
• chemotaxis CheV homolog {Vibrio parahaemolyticus}
• chemotaxis CheV homolog {Vibrio parahaemolyticus}
• chemotaxis protein CheY {Pseudomonas aeruginosa}
• chemotaxis protein CheY, putative {Pseudomonas aeruginosa}
• CheZ, chemotaxis protein
• chemotaxis protein methyltransferase {Escherichia coli}
• CheW
• chitinase A {Vibrio harveyi}
• chloramphenicol acetyltransferase {Escherichia coli}
• chloramphenicol and florfenicol resistance protein, putative {Salmonella typhimurium}
• chorismate--pyruvate lyase
• chromate transport protein {Bacillus cereus}
• chromosomal replication initiator protein DnaA {Escherichia coli}
• citrate synthase {Salmonella typhimurium}
• cobalamin (5'-phosphate) synthase {Escherichia coli}
• cobalamin periplasmic binding protein {Salmonella typhimurium}
• cobinamide kinase/cobinamide phosphate guanylyltransferase, putative {Rhodobacter capsulatus}
• CobQ protein {Rhodobacter capsulatus}
• component involved in Haem biosynthesis, putative {Reclinomonas americana}
• coniferyl aldehyde dehydrogenase {Pseudomonas sp.}
• conserved hypothetical protein
• conserved hypothetical protein
• conserved hypothetical protein
• conserved hypothetical protein
• conserved hypothetical protein
• conserved hypothetical protein
• conserved hypothetical protein {Pseudomonas aeruginosa}
• conserved hypothetical protein {Shewanella frigidimarina}
• conserved hypothetical protein {Shewanella frigidimarina}
• conserved hypothetical protein {Shewanella sp. SCRC-2738}
• conserved hypothetical protein {Shewanella sp. SCRC-2738}
• conserved hypothetical protein {Shewanella sp. SCRC-2738}
• conserved hypothetical protein {Shewanella sp. SCRC-2738}
• conserved hypothetical protein {Shewanella sp. SCRC-2738}
• copper transport ATP-binding protein NosF {Pseudomonas stutzeri}
• copper-binding periplasmic protein precursor {Pseudomonas stutzeri}
• coproporphyrinogen III oxidase, aerobic
• CpxA product {Escherichia coli}
• CS2 pili production protein (CotB) {Escherichia coli}
• c-type cytochrome precursor {Shewanella putrefaciens}
• c-type cytochrome precursor MtrA {Shewanella putrefaciens}
• c-type cytochrome precursor-related
• curli production assembly/transport component CsgG precursor {Escherichia coli}
• CydD {Shewanella sp.} other roles: 141
• cys regulon transcriptional activator {Enterobacter aerogenes} all roles: 75 129
• CysE2 {Azotobacter vinelandii}
• CysQ protein {Escherichia coli}
• CysQ protein homolog {Haemophilus actinomycetemcomitans}
• cysteine synthase A {Escherichia coli}
• cysteine synthase B {Salmonella choleraesuis}
• cytochrome b
• cytochrome c' {Paracoccus sp.}
• cytochrome c maturation protein A {Shewanella putrefaciens}
• cytochrome c maturation protein B {Shewanella putrefaciens} other roles: 156
• cytochrome c maturation protein C {Shewanella putrefaciens}
• cytochrome c maturation protein E {Shewanella putrefaciens}
• cytochrome c oxidase folding protein {Synechocystis PCC6803}
• cytochrome c oxidase subunit II {Tachyoryctes splendens}
• cytochrome c peroxidase {Aquifex aeolicus}
• cytochrome c1 precursor
• cytochrome c3
• cytochrome c4 precursor {Pseudomonas stutzeri}
• cytochrome c552 precursor {Escherichia coli}
• cytochrome c-type biogenesis protein {Haemophilus influenzae}
• cytochrome c-type biogenesis protein CycK {Pseudomonas fluorescens}
• cytochrome c-type biogenesis protein CycI precursor {Pseudomonas fluorescens}
• cytochrome c-type biogenesis protein NrfF precursor {Escherichia coli}
• cytochrome c-type oxidase, membrane bound (FixO) {Azorhizobium caulinodans}
• cytochrome c-type protein Shp (oxygen-binding heme protein)
• cytochrome d ubiquinol oxidase subunit i {Azotobacter vinelandii}
• cytochrome d ubiquinol oxidase subunit ii {Escherichia coli}
• cytochrome oxidase subunit 3 {Bos taurus}
• cytochrome-c oxidase, subunit I {Nitrobacter winogradskyi}
• D-3-phosphoglycerate dehydrogenase {Escherichia coli}
• DcrH, putative {Desulfovibrio vulgaris}
• deca-heme c-type cytochrome {Shewanella putrefaciens}
• deca-heme c-type cytochrome MtrC {Shewanella putrefaciens
• deca-heme c-type cytochrome MtrD {Shewanella putrefaciens}
• deca-heme c-type cytochrome MtrF {Shewanella putrefaciens}
• deca-heme c-type cytochrome OmcA {Shewanella putrefaciens}
• deca-heme c-type cytochrome, putative {Shewanella putrefaciens}
• delta-aminolevulinic acid dehydratase {Pseudomonas aeruginosa}
• delta-aminolevulinic acid dehydratase (ec 4.2.1.24) (porphobilinogen synthase) (alad) (aladh)
• deoxyribose-phosphate aldolase {Escherichia coli} EGAD:10227 0.0%
• d-erythrose 4-phosphate dehydrogenase (ec 1.2.1.-) (e4pdh) all roles: 84 116
• dihydrolipoamide acetyltransferase {Enterococcus faecalis}
• dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (ec 2.3.1.12) (e2)
• dihydrolipoamide dehydrogenase {Escherichia coli}
• dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (ec 2.3.1.61) (e2)
• dimethyl sulfoxide reductase subunit B {Yersinia pestis}
• dimethyl sulfoxide reductase subunit B {Yersinia pestis}
• dioxygenase, putative {Marah macrocarpus}
• disulfide bond formation protein B {Haemophilus influenzae}
• disulfide bond formation protein B, putative {Haemophilus influenzae}
• disulfide isomerase {Klebsiella sp.}
• disulfide isomerase (NosL) {Pseudomonas stutzeri}
• d-lactate dehydrogenase {Escherichia coli}
• D-lactate dehydrogenase (dld) {Helicobacter pylori}
• DNA gyrase subunit B {Salmonella typhimurium}
• DNA ligase (ec 6.5.1.1) (polydeoxyribonucleotide synthase [atp])
• DNA mismatch repair protein {Haemophilus influenzae}
• DNA repair protein {Haemophilus influenzae}
• DNA repair protein RadA {Escherichia coli}
• DNA repair protein RadC {Escherichia coli}
• DNA repair protein RecN (recombination protein N)
• DNA topoisomerase iii {Escherichia coli}
• DNA topoisomerase IV {Vibrio parahaemolyticus}
• DNA-3-methyladenine glycosidase i {Escherichia coli}
• DnaB protein - Salmonella typhimurium
• DNA-damage-inducible protein F {Escherichia coli} EGAD:8949 0.0%
• DNA-damage-inducible protein P {Escherichia coli} EGAD:91116 0.0%
• DNA-invertase {Rhodospirillum rubrum}
• DNA-invertase {Rhodospirillum rubrum}
• DnaJ protein {Escherichia coli}
• DnaK {Salmonella typhimurium}
• drug resistance translocase {Escherichia coli}
• electron transfer flavoprotein alpha-subunit (alpha-ETF) {Bradyrhizobium japonicum} EGAD:45711 0.0%
• electron transfer flavoprotein beta-subunit (beta-ETF) {Bradyrhizobium japonicum} EGAD:45712 0.0%
• electron transfer flavoprotein-ubiquinone oxidoreductase homolog {Acinetobacter calcoaceticus} EGAD:128939 0.0%
• electron transport regulator A (EtrA) {Shewanella putrefaciens} EGAD:22130 0.0%
• elongation factor G
• enolase {Escherichia coli}
• ExbB2 {Vibrio cholerae}
• ExoD protein {Rhizobium meliloti}
• fatty acid metabolism regulator protein {Escherichia coli} other roles: 176
• FdhD protein {Escherichia coli} EGAD:24188 0.0%
• FdhE protein {Escherichia coli} EGAD:9765 0.0%
• FeoB-like protein {Shewanella putrefaciens}
• ferredoxin
• ferredoxin, 2Fe-2S {Pseudomonas aeruginosa} EGAD:102136 0.0%
• ferredoxin--NapD reductase (ec 1.18.1.2) (Fnr) (flavodoxin reductase) (flxr) (fldr) (methyl viologen resistance protein A) (da1)
• ferredoxin-type protein NapF {Escherichia coli}
• ferredoxin-type protein NapG {Escherichia coli}
• ferredoxin-type protein NapH {Escherichia coli}
• ferric alcaligin siderophore receptor {Bordetella pertussis}
• ferric hydroxamate transport protein fhuf-related {Escherichia coli}
• ferric uptake regulation protein (Fur) {Listonella anguillarum} EGAD:20497 0.0%
• ferrichrome transport ATP-binding protein FhuC {Escherichia coli}
• ferrichrome-iron receptor {Synechocystis PCC6803}
• ferrichrome-iron receptor, putative {Synechocystis PCC6803}
• ferrisiderophore receptor-like protein, putative {Pseudomonas sp. BG33R}
• ferritin {Haemophilus influenzae}
• ferrochelatase
• ferrochelatase (HemH) {Yersinia enterocolitica} EGAD:29631 0.0%
• ferrodoxin like protein
• ferrodoxin, putative {Escherichia coli}
• FixG protein {Rhizobium leguminosarum} EGAD:146379
• FixG protein {Rhizobium leguminosarum} EGAD:146379
• FK506 binding protein {Aeromonas hydrophila}
• flavocytochrome c flavin subunit {Wolinella succinogenes}
• flavocytochrome c flavin subunit {Wolinella succinogenes}
• flavocytochrome c flavin subunit {Wolinella succinogenes}
• flavocytochrome c flavin subunit ( ) {Wolinella succinogenes}
• flavocytochrome c heme subunit
• flavocytochrome c heme subunit
• flavocytochrome c heme subunit
• flavocytochrome c heme subunit-related
• flavodoxin 1-related
• FlhS, putative {Paracoccus denitrificans} other roles: 187
• formaldehyde dehydrogenase (glutathione) {Escherichia coli}
• formaldehyde dehydrogenase (glutathione) {Escherichia coli}
• formate acetyltransferase 1 {Escherichia coli}
• formate dehydrogenase {Wolinella succinogenes}
• formate dehydrogenase {Wolinella succinogenes}
• formate dehydrogenase {Wolinella succinogenes}
• formate dehydrogenase alpha subunit {Moorella thermoacetica} other roles: 159
• formate dehydrogenase gamma subunit, putative {Aquifex aeolicus}
• formate dehydrogenase iron-sulfur subunit {Wolinella succinogenes} other roles: 159
• formate dehydrogenase iron-sulfur subunit {Wolinella succinogenes} other roles: 159
• formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit
• formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit, putative {Escherichia coli}
• formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
• formate dehydrogenase-o, major subunit
• FrdC {Helicobacter pylori}
• fructose-1,6-bisphosphatase, plasmid (ec 3.1.3.11) (d-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase)
• fructose-1,6-bisphosphate aldolase {Pseudomonas stutzeri}
• fumarate (and nitrate) reduction regulatory protein {Haemophilus influenzae}
• fumarate hydratase (fumarase) {Aquifex aeolicus}
• fumarate reductase cytochrome B subunit {Wolinella succinogenes}
• fumarate reductase flavocytochrome c3 {Shewanella frigidimarina}
• fumarate reductase flavoprotein subunit {Wolinella succinogenes} all roles: 110
• fumarate reductase flavoprotein subunit precursor {Shewanella putrefaciens}
• fumarate reductase iron-sulfur protein {Wolinella succinogenes} all roles: 112 120
• FxsA protein, fragment {Serratia marcescens}
• galactokinase {Salmonella choleraesuis}
• gamma-glutamyltranspeptidase precursor {Escherichia coli}
• general secretion pathway protein A {Aeromonas hydrophila}
• geranyltranstransferase {Haemophilus influenzae}
• Glp protein, putative, putative {Haemophilus influenzae} all roles: 102 110
• glucitol operon repressor {Escherichia coli}
• glucose-6-phosphate 1-dehydrogenase {Erwinia chrysanthemi}
• glucose-6-phosphate isomerase, chloroplast (gpi) (phosphoglucose isomerase) (pgi) (phosphohexose isomerase) (phi) {Clarkia unguiculata}
• glutamate racemase (ec 5.1.1.3)
• glutamate synthase (NADPH) large chain {Escherichia coli} other roles: 102
• glutamate synthase [nadph] small chain (ec 1.4.1.13) (glutamate synthase beta subunit) (nadph-gogat) (glts beta chain)
• glutamate--cysteine ligase {Escherichia coli}
• glutamine synthetase {Vibrio alginolyticus} all roles: 73 160
• glutamyl-tRNA reductase {Escherichia coli}
• glutathione peroxidase (ec 1.11.1.9)
• glutathione peroxidase precursor (ec 1.11.1.9)-related
• glutathione reductase {Escherichia coli}
• glutathione s-transferase, putative {Escherichia coli}
• glutathione synthetase {Escherichia coli}
• glutathione-regulated potassium-efflux system protein KefC {Escherichia coli}
• glyceraldehyde 3-phosphate dehydrogenase 3 {Anabaena variabilis}
• glycerol metabolism activator {Pseudomonas aeruginosa} all roles: 110 129
• glycerol metabolism activator {Pseudomonas aeruginosa} all roles: 110 129
• glycerol-3-phosphate dehydrogenase (NAD+) {Escherichia coli}
• GTP cyclohydrolase ii {Escherichia coli}
• H(+)-transporting ATP synthase (AtpA) {Escherichia coli} EGAD:19577 0.0%
• heat shock protein {Haemophilus influenzae}
• heat shock protein HslJ, putative {Escherichia coli}
• heat shock protein HslU {Escherichia coli}
• heat shock protein HslV {Escherichia coli}
• heat shock protein HtpG {Escherichia coli}
• heat shock protein HtpX {Escherichia coli} EGAD:18140 0.0%
• heat shock protein-related
• heavy metal regulator HmrR {Rhizobium leguminosarum bv. viciae}
• heme receptor, putative {Vibrio cholerae}
• heme-binding domain protein (CycK) {Pseudomonas fluorescens}EGAD:38532
• heme-hemopexin utilization protein C {Haemophilus influenzae}
• hemin receptor precursor, putative
• HemK protein {Escherichia coli}
• HemN-related protein, putative {Bacillus subtilis}
• hemY protein, putative {Haemophilus influenzae}
• histidine utilization repressor protein (Hut) {Pseudomonas putida} EGAD:24548
• homoserine/homoserine lactone efflux protein, putative
• HupE protein precursor {Rhizobium leguminosarum}
• HydH, putative {Escherichia coli}
• hydrogen uptake histidine-kinase, putative {Rhodobacter sphaeroides}
• hydrogen uptake histidine-kinase, putative {Rhodobacter sphaeroides}
• hydrogenase (EC 1.18.99.1) (NiFe) HydB - Wolinella succinogenes
• hydrogenase (HydA) {Wolinella succinogenes} EGAD:14634 0.0%
• hydrogenase accessory protein HypA {Aquifex aeolicus}
• hydrogenase cytochrome b-type subunit homolog {Chromatium vinosum}
• hydrogenase cytochrome b-type subunit homolog {Chromatium vinosum}
• hydrogenase expression/formation protein {Aquifex aeolicus}
• hydrogenase expression/formation protein {Helicobacter pylori}
• hydrogenase expression/formation protein B {Aquifex aeolicus}
• hydroxamate-type ferrisiderophore receptor {Pseudomonas aeruginosa}
• hypothetical membrane protein {Shewanella massilia}
• hypothetical oxidoreductase in btur-sohb intergenic region {Escherichia coli}
• hypothetical oxidoreductase in pnta-rsta intergenic region {Escherichia coli}
• hypothetical protein
• hypothetical protein
• hypothetical protein
• hypothetical sugar kinase {Escherichia coli} EGAD:91294 0.0%
• hypothetical transcriptional regulator {Escherichia coli} EGAD:15923 0.0%
• hypothetical transcriptional regulator {Escherichia coli} EGAD:6794 0.0%
• Icc protein {Escherichia coli} EGAD:12263 0.0%
• Ifc3 protein {Shewanella frigidimarina}
• Ifc3 protein-related
• inner membrane protein cred, putative {Escherichia coli}
• inner membrane protein, 60 kDa {Haemophilus influenzae} other roles: 156
• integral membrane protein {Rhodobacter capsulatus}
• iron binding protein FbpA precursor
• iron transport protein {Synechocystis PCC6803} EGAD:49646 0.0%
• iron utilization protein {Synechocystis PCC6803} EGAD:48950 0.0%
• iron(III) ABC transporter, permease protein, putative {Thermotoga maritima}
• iron-regulated outer membrane virulence protein precursor {Vibrio cholerae}
• iron-uptake factor {Pseudomonas aeruginosa}
• isocitrate dehydrogenase (Icd) {Azotobacter vinelandii}
• isocitrate lyase
• isomerase {Escherichia coli}
• isoquinoline 1-oxidoreductase {Brevundimonas diminuta}
• l-asparaginase I {Escherichia coli} EGAD:9104 0.0%
• LexA repressor (LexA) {Aeromonas hydrophila} EGAD:42894 0.0%
• lipid A biosynthesis (kdo)2-(lauroyl)-lipid IVA acyltransferase {Haemophilus influenzae} EGAD:28845 0.0%
• lipoprotein {Vibrio cholerae}
• lipoprotein NlpD precursor {Escherichia coli}
• lipoprotein, putative {Haemophilus influenzae} all roles: 87 88
• L-lactate permease {Archaeoglobus fulgidus}
• long chain fatty acid CoA ligase, putative
• l-seryl-tRNA(sec) selenium transferase
• LuxZ, putative {Photobacterium leiognathi}
• lysyl-tRNA synthetase, heat inducible {Escherichia coli} EGAD:20627 0.0%
• LytB protein {Escherichia coli} EGAD:19519 0.0%
• malate dehydrogenase {Vibrio cholerae}
• malate oxidoreductase, putative {Escherichia coli} EGAD:91656 0.0%
• malate synthase A {Escherichia coli}
• malate synthase G, putative {Escherichia coli}
• membrane protein
• membrane protein (GB:L28837_4) {Pseudomonas syringae}
• membrane protein, putative {Mycoplasma hominis}
• menaquinone-specific isochorismate synthase (ec 5.4.99.6)
• MenB {Mycobacterium tuberculosis}
• MenG {Pseudomonas fluorescens}
• methyltransferase (RapQ) {Streptomyces hygroscopicus}
• MitJ {Streptomyces lavendulae}
• MoaA {Rhodobacter capsulatus}
• molybdate periplasmic binding protein {Aquifex aeolicus}
• molybdenum cofactor biosynthesis MOG {Aquifex aeolicus} EGAD:155509 0.0%
• molybdenum cofactor biosynthesis protein (MoeA-2) {Methanococcus jannaschii}
• molybdenum cofactor biosynthesis protein A {Escherichia coli}
• molybdenum cofactor biosynthesis protein C
• Molybdenum transport system permease {Aquifex aeolicus}
• molybdopterin [mpt] converting factor, subunit 2 (molybdenum cofactor biosynthesis protein e) (molybdopterin converting factor large subunit)
• molybdopterin biosynthesis MoeA protein
• molybdopterin biosynthesis MoeA protein {Escherichia coli}
• molybdopterin biosynthesis MoeB protein {Escherichia coli}
• molybdopterin-guanine dinucleotide biosynthesis protein {Haemophilus influenzae}
• mono-heme c-type cytochrome ScyA
• multidrug resistance protein B {Haemophilus influenzae} EGAD:29370 0.0%
• multidrug resistance protein D {Escherichia coli}
• N-acylhomoserine lactone synthesis, putative {Yersinia enterocolitica}
• nad(p) transhydrogenase subunit alpha {Escherichia coli} all roles: 102 112
• nad(p) transhydrogenase subunit beta {Escherichia coli} all roles: 102 112
• nad(p)h-flavin reductase (ec 1.6.8.-)
• NAD+ dependent acetaldehyde dehydrogenase {Pseudomonas aeruginosa}
• NAD+-isocitrate dehydrogenase, alpha subunit {Macaca fascicularis}
• NADH dehydrogenase (ec 1.6.99.3) all roles: 108 112
• NADH dehydrogenase chain A
• NADH dehydrogenase chain B {Erwinia carotovora subsp. carotovora} all roles: 108 112
• NADH dehydrogenase I chain d {Escherichia coli} other roles: 112
• NADH dehydrogenase I chain e {Salmonella choleraesuis} all roles: 108 112
• NADH dehydrogenase I chain f {Escherichia coli} other roles: 112
• NADH dehydrogenase I chain G {Escherichia coli}
• NADH dehydrogenase I chain h {} all roles: 108 112
• NADH DEHYDROGENASE I CHAIN I (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 9) (NUO9) {Escherichia coli}
• NADH dehydrogenase I chain j {Escherichia coli} all roles: 108 112
• NADH dehydrogenase I chain l {Escherichia coli} other roles: 112
• NADH dehydrogenase I chain m {Escherichia coli} all roles: 108 112
• NADH dehydrogenase I chain N {Escherichia coli}
• NADH:ubiquinone oxidoreducatase subunit A, Na translocating {Haemophilus influenzae}/LI>
• NADH:ubiquinone oxidoreductase subunit B (nqrB) {Vibrio alginolyticus}
• NADH:uniquinone oxidoreductase (NqrD) {Vibrio alginolyticus}
• NarQ protein, putative {Bacillus subtilis}
• negative regulatory protein of pho regulon {Enterobacter cloacae}
• NifS protein homolog
• Nif-specific regulatory protein {Azotobacter vinelandii}
• nitrate/nitrite response regulator protein NarP {Escherichia coli}
• nitrate/nitrite sensor protein NarQ {Escherichia coli} EGAD:24114 0.0%
• nitrogen assimilation regulatory protein nac, putative {Enterobacter aerogenes}
• nitrogen fixation positive activator (NifL) {Synechocystis PCC6803}
• nitrogen fixation positive activator (NifL) {Synechocystis PCC6803}
• nitrogen fixation positive activator (NifL) {Synechocystis PCC6803}
• nitrogen fixation positive activator, putative {Synechocystis PCC6803}
• nitrogen regulation protein nr (i) {Escherichia coli} all roles: 73 129
• nitrogen regulator 1 {Vibrio alginolyticus}
• nitrogen regulator 1, putative {Vibrio alginolyticus}
• NosY {Sinorhizobium meliloti} GP:2177176
• Nqr2 subunit of Na-translocating NADH-quinone reductase complex {Vibrio alginolyticus}
• NqrC {Vibrio cholerae}
• NqrC {Vibrio cholerae} all roles: 108 112
• NqrD {Vibrio cholerae}
• NqrE {Vibrio cholerae}
• NqrE {Vibrio cholerae}
• NqrF {Vibrio cholerae}
• NrfC protein {Escherichia coli} EGAD:10676 0.0%
• NrfD protein {Escherichia coli} EGAD:10526 0.0%
• NrfG homolog {Shewanella putrefaciens}
• NtrB protein - Vibrio alginolyticus PIR:JL0114
• nuclease-related {Aeromonas hydrophila}
• O-acetylhomoserine sulfhydrylase {Thermotoga maritima}
• octaprenyl-diphosphate synthase {Escherichia coli}
• OmpS2 protein, putative {Salmonella typhi}
• organic solvent tolerance protein precursor {Escherichia coli} EGAD:7471 0.0%
• OruR protein, putative {Pseudomonas aeruginosa}
• osmolarity sensor protein EnvZ {Salmonella choleraesuis}
• o-succinylbenzoate-CoA synthase {Escherichia coli}
• O-SUCCINYLBENZOIC ACID--COA LIGASE (EC 6.2.1.26) (O-SUCCINYLBENZOATE-COA SYNTHASE) {Escherichia coli} other roles: 102
• outer membrane lipoprotein LolB precursor, putative {Pseudomonas aeruginosa}
• outer membrane porin OmpC, putative {Serratia marcescens}
• outer membrane porin, putative {Serratia marcescens}
• outer membrane protein {Rhizobium leguminosarum}
• outer membrane protein C, putative {Aquifex aeolicus}
• outer membrane protein MtrE {Shewanella putrefaciens}
• outer membrane protein OmpK precursor {Vibrio parahaemolyticus}
• outer membrane protein OmpK precursor {Vibrio parahaemolyticus}
• outer membrane protein P1 precursor, subtype 6U - Haemophilus influenzae (strain 8358, type b)
• outer membrane protein precursor {Shewanella putrefaciens}
• outer membrane protein precursor MtrB {Shewanella putrefaciens}
• outer membrane protein precursor, putative {Shewanella putrefaciens}
• outer membrane protein w precursor {Escherichia coli}
• outer membrane protein, 48 kDa {Actinobacillus pleuropneumoniae}
• oxygen-independent coproporphyrinogen iii oxidase (coproporphyrinogenase) (coprogen oxidase)
• oxygen-independent coproporphyrinogen III oxidase, putative
• oxygen-insensitive nad(p)h nitroreductase
• oxygen-insensitive NAD(P)H nitroreductase {Salmonella choleraesuis} EGAD:6121
• para-aminobenzoate synthase glutamine amidotransferase component II (PabA) {Serratia marcescens} EGAD:8143 0.0%
• PcaJ {Streptomyces sp. 2065}
• penicillin-binding protein 1a (pbp-1a)
• penicillin-binding protein 1B {Pseudomonas aeruginosa}
• penicillin-binding protein 2 {Escherichia coli}
• penicillin-binding protein 3 precursor {Escherichia coli} other roles: 93
• penicillin-binding protein 5 precursor {Escherichia coli}
• penicillin-binding protein 7 precursor {Escherichia coli}
• pentahemic c-type cytochrome {Shewanella massilia}
• peptide chain release factor 3-related {Haemophilus influenzae}
• peptide methionine sulfoxide reductase {Methanobacterium thermoautotrophicum}
• peptidyl-prolyl cis-trans isomerase (ec 5.2.1.8) (ppiase) (rotamase) (cyclophilin) (fragment)
• periplasmic (Fe) hydrogenase large subunit {Desulfovibrio vulgaris}
• periplasmic nitrate reductase precursor {Escherichia coli}
• periplasmic nitrate reductase small subunit precursor
• periplasmic protein {Photorhabdus luminescens}
• periplasmic protein tort precursor {Escherichia coli}
• phenylalanine-4-hydroxylase (PhhA) {Pseudomonas aeruginosa} EGAD:17333 0.0%
• phosphate acetyltransferase {Escherichia coli}
• phosphate regulon sensor protein PhoR {Escherichia coli} EGAD:8054 0.0%
• phosphate regulon transcriptional regulatory protein PhoB (phoB) {Klebsiella pneumoniae} EGAD:13581 0.0%
• phosphate specific transport complex component (PstB) {Pseudomonas aeruginosa}
• phosphatidylserine synthase {Helicobacter pylori}
• phosphoadenosine phosphosulfate reductase {Salmonella choleraesuis}
• phosphoenolpyruvate carboxykinase (ATP) {Bacillus subtilis}
• phosphoenolpyruvate carboxylase {Escherichia coli}
• phosphoenolpyruvate synthase (ec 2.7.9.2) (pyruvate,water dikinase) (pep synthase)
• phosphoenolpyruvate-protein phosphotransferase {Haemophilus influenzae}
• phosphoenolpyruvate-protein phosphotransferase PtsP {Pseudomonas aeruginosa}
• phosphoglucomutase {Escherichia coli}
• phosphogluconate dehydratase {Escherichia coli}
• phosphoglycerate kinase {Escherichia coli}
• phosphoglycolate phosphatase {Escherichia coli}
• phosphoglycolate phosphatase {Haemophilus influenzae}
• phosphoserine aminotransferase {Escherichia coli}
• phosphoserine phosphatase-related {Escherichia coli}
• photosystem I subunit VII (PsaC) {Synechocystis PCC6803}
• poly(a) polymerase (ec 2.7.7.19) (pap) (plasmid copy number protein)
• polysaccharide biosynthesis protein-related {Methanococcus jannaschii}
• polysulfide reductase chain b {Wolinella succinogenes}
• polysulfide reductase chain c {Wolinella succinogenes}
• polysulfide reductase chain c {Wolinella succinogenes}
• porin, putative {Shewanella frigidimarina}
• porphobilinogen deaminase {Proteus mirabilis} all roles: 76 79
• positive regulator of late transcription-related
• pressure-regulated ORF2 {Mariana eubacterium no. 13}
• Prismane {6Fe-6S}
• probable copper-transporting ATPase {Escherichia coli}
• Probable csgAB operon transcriptional regulatory protein, putative {Escherichia coli}
• probable formate transporter 1 {Escherichia coli}
• probable hydrogen peroxide-inducible genes activator, putative {Mycobacterium leprae}
• probable malate oxidoreductase {Escherichia coli}
• probable Ni/Fe-hydrogenase b-type cytochrome subunit, putative {Rhizobium leguminosarum}
• probable nitrogen assimilation transcriptional activator, putative {Pseudomonas aeruginosa}
• probable oxidoreductase ordl {Escherichia coli}
• probable oxidoreductase ordl {Escherichia coli}
• probable oxidoreductase ordl {Escherichia coli}
• probable phosphoribulokinase {Escherichia coli}
• probable thiol peroxidase (ec 1.11.1.)
• probable transcriptional regulatory protein ChvI {Rhizobium meliloti}
• probable transcriptional regulatory protein YgiX {Escherichia coli} EGAD:36567 0.0%
• probable transcriptional regulatory protein YlcA {Escherichia coli} EGAD:90628 0.0%
• probable UDP-galactose 4-epimerase {Vibrio cholerae}
• processing protease
• prolipoprotein diacylglyceryl transferase {Vibrio cholerae} other roles: 176
• protease DegQ precursor {Escherichia coli}
• protease DegS precursor {Escherichia coli}
• protein-tyrosine-phosphatase {Shewanella sp.}
• PrpC {Legionella pneumophila} all roles: 114 120
• Psp operon transcriptional activator {Escherichia coli} EGAD:5594 0.0%
• Pts system, glucose-specific iia component {Salmonella choleraesuis}
• Pts system, glucose-specific iibc component {Escherichia coli}
• putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase {Haemophilus ducreyi}
• putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase {Escherichia coli}
• putative acetyl transferase-related {Vibrio anguillarum}
• putative aldehyde dehydrogenase {Escherichia coli}
• putative flavoprotein subunit {Shewanella putrefaciens}
• putative l-lactate permease {Escherichia coli}
• putative membrane anchor protein subunit {Shewanella putrefaciens}
• putative molybdenum transport ATP-binding protein ModF {Escherichia coli}
• putative NAD(P)H steroid dehydrogenase, putative {Mus musculus}
• putative oxidoreductase, putative {Streptomyces coelicolor}
• putative quinone oxidoreductase {Streptomyces coelicolor}
• putative quinone oxidoreductase, putative {Schizosaccharomyces pombe}
• putative thiosulfate sulfurtransferase (ec 2.8.1.1) (rhodanese-like protein)
• putative transmembrane permease FbpB
• putative uroporphyrin-iii c-methyltransferase, putative {Escherichia coli}
• pyruvate dehydrogenase complex repressor
• pyruvate dehydrogenase e1 component
• pyruvate formate-lyase 1 activating enzyme {Escherichia coli}
• pyruvate kinase ii (ec 2.7.1.40) (pk-2)
• quinone-reactive Ni/Fe hydrogenase (HydD) {Helicobacter pylori}
• quinone-reactive Ni/Fe-hydrogenase b-type cytochrome subunit {Wolinella succinogenes}
• quinone-reactive Ni/Fe-hydrogenase small chain precursor
• RadC
• rare lipoprotein A {Pseudomonas aeruginosa}
• rare lipoprotein b precursor {Escherichia coli}
• RcsB {Erwinia amylovora}
• RcsC, putative {Proteus mirabilis}
• RegA protein {Rhodobacter capsulatus}
• RegS, putative {Bradyrhizobium japonicum}
• repA gene product {Plasmid R401} GP:151814
• replication initiator protein
• replication protein, putative {Rhizobium leguminosarum}
• response regulator {Pseudomonas putida} EGAD:141040 0.0%
• ribokinase {Escherichia coli}
• ribose 5-phosphate isomerase a (ec 5.3.1.6) (phosphoriboisomerase a)
• ribose operon repressor, putative
• ribosomal protein S12 {Escherichia coli} EGAD:13767 0.0%
• RNA polymerase sigma factor {Shewanella violacea} all roles: 129 165
• RNA polymerase sigma factor N [RpoN] {Vibrio alginolyticus}
• RNA polymerase sigma factor RpoS {Yersinia enterocolitica}
• RNA polymerase sigma-32 factor {Serratia marcescens} other roles: 165
• RNA polymerase sigma-E factor, putative {Mycobacterium leprae}
• RpoE homologue {Rhodobacter sphaeroides}
• rubisco operon transcriptional regulator (RbcR) {Synechocystis PCC6803} EGAD:47383 0.0%
• s-adenosylmethionine:2-demethylmenaquinone methyltransferase {Escherichia coli}
• SecD protein {Enterobacter aerogenes}
• SelB translation factor {Escherichia coli} EGAD:6921 0.0%
• selenocysteine-specific elongation factor
• sensor protein CpxA {Escherichia coli} EGAD:15492 0.0%
• sensor protein TorS, putative {Escherichia coli}
• sensor-regulator protein, putative {Rhodobacter capsulatus}
• sensory transduction histidine kinase-related
• serine acetyltransferase-related {Thermotoga maritima}
• serine hydroxymethyltransferase {Escherichia coli}
• sigma 54 transcriptional activator {Vibrio cholerae} EGAD:142396 0.0%
• sigma 54 transcriptional activator
• sigma-e factor negative regulatory protein {Escherichia coli}
• signma factor 28 {Legionella pneumophila}
• similarity to phosphomannomutases {Schizosaccharomyces pombe}
• single-stranded DNA-binding protein {Shewanella hanedai}
• siroheme synthase {Escherichia coli} EGAD:6104 0.0%
• soluble alkaline phosphatase {Bombyx mori}
• split-soret cytochrome c, putative {Desulfovibrio desulfuricans}
• stringent starvation protein A {Escherichia coli} EGAD:5986 0.0%
• subunit B of DNA gyrase {Salmonella typhimurium}, GyrB, GP:1546916
• succinate dehydrogenase (FrdB) {Wolinella succinogenes} EGAD:6731 0.0%
• succinate dehydrogenase putative iron sulphur subunit {Shewanella putrefaciens}
• succinyl-coa synthetase alpha chain {Escherichia coli}
• succinyl-coa synthetase beta chain {Escherichia coli}
• sucrose transport protein, putative {Solanum tuberosum}
• sugar ABC transporter, periplasmic sugar-binding protein, putative
• sugar fermentation stimulation protein {Escherichia coli}
• sulfate adenylate transferase subunit 1 {Escherichia coli}
• sulfate adenylate transferase subunit 2 {Escherichia coli}
• sulfate transport ATP-binding protein CysA {Escherichia coli}
• sulfate transport ATP-binding protein CysA {Synechococcus sp.}
• sulfate transport system permease protein {Methanobacterium thermoautotrophicum}
• sulfate transport system permease protein {Synechocystis PCC6803}
• sulfate transport system permease protein CysT {Escherichia coli}
• sulfate transport system permease protein CysT {Escherichia coli}
• sulfate transport system permease protein CysW
• sulfide-quinone reductase {Rhodobacter capsulatus}
• sulfide-quinone reductase-related
• sulfite oxidase precursor, putative {Mycobacterium bovis BCG}
• sulfite reductase [nadph] flavoprotein alpha-component (ec 1.8.1.2) (sir-fp)
• sulfite reductase [nadph] hemoprotein beta-component (ec 1.8.1.2) (sir-hp) (sirhp)
• superoxide dismutase (Fe) {Photobacterium leiognathi}
• surface layer protein secretion protein, putative {Aeromonas salmonicida}
• survival protein homolog {Legionella pneumophila}
• survival protein SurA precursor
• Tellurite resistance protein TehB {Escherichia coli}
• tellurium resistance protein TerC
• tetraheme cytochrome c cymA {Shewanella putrefaciens}
• thiamin-monophosphate kinase {Escherichia coli}
• thio:disulfide interchange protein {Chlamydia trachomatis}
• thiophene and furan oxidation protein ThdF {Escherichia coli}
• thioredoxin {Treponema pallidum}
• thioredoxin 1
• thioredoxin-like protein (CycL) {Pseudomonas fluorescens} EGAD:38534 0.0%
• thiosulfate reductase precursor
• thiosulfate-binding protein precursor {Salmonella choleraesuis}
• TolA protein {Escherichia coli}
• TolB protein precursor {Escherichia coli}
• TolQ protein {Escherichia coli}
• TonB protein, putative
• TonB2 {Vibrio cholerae}
• TonB2, putative {Vibrio cholerae}
• Ton-dependent heme receptor A, putative {Haemophilus ducreyi} all roles: 79 147
• TorA specific chaperone {Shewanella massilia}
• TorA specific chaperone, putative {Shewanella massilia}
• TorR {Escherichia coli}
• transaldolase B
• transaldolase B {Escherichia coli} EGAD:21919 0.0%
• transcriptional activator ChrR, putative
• transcriptional activator protein NahR {Pseudomonas putida}
• transcriptional activator protein NahR, putative {Pseudomonas putida}
• transcriptional activator RfaH, putative {Escherichia coli}
• transcriptional regulator (NifA family) {Aquifex aeolicus}
• transcriptional regulatory protein AlgQ {Pseudomonas aeruginosa}
• transcriptional regulatory protein CpxR {Escherichia coli}
• transcriptional regulatory protein FixJ {Bradyrhizobium japonicum} other roles: 160
• transcriptional regulatory protein HypF {Aquifex aeolicus}
• transcriptional regulatory protein OmpR {Escherichia coli}
• transcriptional regulatory protein PhoP {Escherichia coli}
• transcriptional regulatory protein RstA {Escherichia coli}
• transcriptional regulatory protein RstA {Escherichia coli} EGAD:36990 0.0%
• transcriptional regulatory protein TyrR {Escherichia coli} EGAD:20014 0.0%
• transketolase {Escherichia coli}
• transmembrane component of the phosphate specific transport complex {Pseudomonas aeruginosa}
• transmembrane protein PstC {Streptococcus pneumoniae}
• trimethylamine-N-oxide reductase
• Ttk protein {Escherichia coli}
• TtrR {Salmonella typhimurium} all roles: 129 160
• TtrS, putative {Salmonella typhimurium}
• TtrS, putative {Salmonella typhimurium}
• two-component response regulator
• two-component sensor kinase protein
• UbiH protein (ec 1.14.13.-)
• ubiquinol-cytochrome c reductase iron-sulfur subunit (ec 1.10.2.2) (rieske iron-sulfur protein) (risp)
• ubiquinone/menaquinone biosynthesis methlytransferase ubie {Escherichia coli}
• udp-glucose 4-epimerase {Bacillus subtilis} other roles: 128
• uridylyl-transferase {Vibrio fischeri}
• urocanase {Pseudomonas putida} EGAD:24865 0.0%
• uroporphyrinogen decarboxylase
• uroporphyrinogen-iii synthase {Escherichia coli}
• utp--glucose-1-phosphate uridylyltransferase (ec 2.7.7.9) other roles: 128
• VacB protein {Escherichia coli} EGAD:24912 0.0%
• VacJ lipoprotein precursor {Escherichia coli}
• vibriobactin receptor precursor, putative {Sphingomonas aromaticivorans}
• vibriobactin receptor precursor, putative {Vibrio cholerae}
• xylose operon regulatory protein (XylR) {Synechocystis PCC6803}

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Last Modified: January 23, 2002